Matiq
360479653a
- ffpe_damage_v2.py: normalized C>T/G>A profiling (all 12 substitutions, R1/R2 and strand profiles, 5'/3' read-end distance, BED tracks, plots) - ffpe_compare.py: low/moderate/high classification vs control samples - make_test_data.py: synthetic BAM with known damage for validation
ffpe_damage
FFPE deamination QC: normalized C>T/G>A profiling from BAM + control-based classification