Files
ffpe_damage/.gitignore
T
Matiq 360479653a FFPE deamination QC pipeline
- ffpe_damage_v2.py: normalized C>T/G>A profiling (all 12 substitutions,
  R1/R2 and strand profiles, 5'/3' read-end distance, BED tracks, plots)
- ffpe_compare.py: low/moderate/high classification vs control samples
- make_test_data.py: synthetic BAM with known damage for validation
2026-08-14 20:26:25 +03:00

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.venv/
__pycache__/
*.pyc
test_data/
FFPE_QC/