ffpe_damage

3 Commits 1 Branch 0 Tags

3 Commits

Author	SHA1	Message	Date
Matiq	5fe6298926	README: methodology, usage, outputs, classification, validation	2026-08-14 20:27:31 +03:00
Matiq	360479653a	FFPE deamination QC pipeline - ffpe_damage_v2.py: normalized C>T/G>A profiling (all 12 substitutions, R1/R2 and strand profiles, 5'/3' read-end distance, BED tracks, plots) - ffpe_compare.py: low/moderate/high classification vs control samples - make_test_data.py: synthetic BAM with known damage for validation	2026-08-14 20:26:25 +03:00
Matiq	eaa0bad7a8	Initial commit	2026-08-14 20:25:38 +03:00

Author

SHA1

Message

Date

Matiq

5fe6298926

README: methodology, usage, outputs, classification, validation

2026-08-14 20:27:31 +03:00

Matiq

360479653a

FFPE deamination QC pipeline

- ffpe_damage_v2.py: normalized C>T/G>A profiling (all 12 substitutions,
  R1/R2 and strand profiles, 5'/3' read-end distance, BED tracks, plots)
- ffpe_compare.py: low/moderate/high classification vs control samples
- make_test_data.py: synthetic BAM with known damage for validation

2026-08-14 20:26:25 +03:00

Matiq

eaa0bad7a8

Initial commit

2026-08-14 20:25:38 +03:00